Index A | C | D | G | I | L | M | N | P | S | T | U | V | W A add_lipids() (PointClass.point.Point method) add_membrane_points() (PointClass.point.Point method) add_points() (PointClass.point.Point.Membrane method) add_pore() (PointClass.point.Point.Exclusion method) add_protein() (PointClass.point.Point.Inclusion method) assign_domains() (in module Tools.domain_placer) C calculate_curvature_weights() (in module Tools.domain_placer) (in module Tools.inclusion_updater) circular_domains() (in module Tools.circular_domains) count (PointClass.point.Point.Exclusion property) (PointClass.point.Point.Inclusion property) create_empty() (PointClass.point.Point class method) (PointClass.point.Point.Membrane class method) curvature (Tools.circular_domains.LipidSpec attribute) (Tools.domain_placer.LipidSpec attribute) D DAI() (in module Tools.circular_domains) density (Tools.circular_domains.LipidSpec attribute) (Tools.domain_placer.LipidSpec attribute) domain_id (Tools.circular_domains.LipidSpec attribute) (Tools.domain_placer.LipidSpec attribute) DOP() (in module Tools.domain_placer) draw_folder() (in module Tools.dir_visualizer) G gaussian_curvature() (PointClass.point.Point.Membrane method) get_all() (PointClass.point.Point.Exclusion method) (PointClass.point.Point.Inclusion method) get_by_type() (PointClass.point.Point.Inclusion method) get_nearby_points_both_leaflets() (in module Tools.inclusion_updater) get_points_by_domain() (PointClass.point.Point.Membrane method) get_points_near_existing_proteins() (in module Tools.inclusion_updater) I INU() (in module Tools.inclusion_updater) L LipidSpec (class in Tools.circular_domains) (class in Tools.domain_placer) M make_fullscreen() (in module Tools.dir_visualizer) mean_curvature (PointClass.point.Point.Membrane property) module PointClass.point Tools.circular_domains Tools.dir_visualizer Tools.domain_placer Tools.inclusion_updater N name (Tools.circular_domains.LipidSpec attribute) (Tools.domain_placer.LipidSpec attribute) P parse_lipid_file() (in module Tools.circular_domains) (in module Tools.domain_placer) pbc_wrap() (in module Tools.inclusion_updater) percentage (Tools.circular_domains.LipidSpec attribute) (Tools.domain_placer.LipidSpec attribute) place_proteins() (in module Tools.inclusion_updater) Point (class in PointClass.point) Point.Exclusion (class in PointClass.point) Point.Inclusion (class in PointClass.point) Point.Membrane (class in PointClass.point) PointClass.point module S save() (PointClass.point.Point method) T Tools.circular_domains module Tools.dir_visualizer module Tools.domain_placer module Tools.inclusion_updater module U update_domains() (PointClass.point.Point method) V VIS() (in module Tools.dir_visualizer) W write_input_str() (in module Tools.circular_domains) (in module Tools.domain_placer)